Sign In Sign-Up

Welcome!

Close

Would you like to make this site your homepage? It's fast and easy...

Yes, Please make this my home page!

No Thanks

  Don't show this to me again.

Close

HOME

SIM - Results of the Alignment

Click here to download LALNVIEW (Unix, Mac and PC versions available).
You can also have a look at a sample screen of LALNVIEW and access its documentation.

Results of SIM with:

using the parameters:

Evaluate the significance of this protein sequence similarity score using PRSS at EMBnet-CH.

70.0% identity in 170 residues overlap; Score: 548.0; Gap frequency: 0.6%

orata,         1 MACAHTGSGLTAAFLLPILQQLMADGVAASSFSELLEPEAIIVAPTRELINQIYLEARKF
trota,         1 MACAQTGSGKTAAFLLPILQQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKF
                 **** **** ************* ****** ***  *** ************** *****

orata,        61 AYGTCVRPVVVYGGVSTGHQIREICRGCN-LCGTPGRLLDMIGRGKIGLTKLRYFVLDEA
trota,        61 AHGTCVRPVVVYGGISTGHTIREILKGCNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEA
                 * ************ **** ****  *** ** ***** * ******** **** *****

orata,       120 DRMLDMGFEPAMAQAGGVPRHTSERGSPDPNVQRYLPEEHPKDGGDLSQR
trota,       121 DRMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYPEDIQKLAADFLKK
                 ************    * *                 **   *   *    

12.0% identity in 166 residues overlap; Score: 60.0; Gap frequency: 3.6%

orata,        91 CGTPGRLLDMIGRGKIGLTKLRYFVLDEADRMLDMGFEPAMAQAGGVPRHTSERGSPDPN
trota,       184 CSDVEQVV--VQVTKFSKRDQLLEVLKTTGSERTMVFVETKRQADFIATFLCREKVNTTS
                 *             *         **        * *     **                

orata,       151 VQRYLPEEHPKDGGDLSQRRTICSWLSVWWAQPAVMRSRHLSRSPSSPRGSSFLTSSKQQ
trota,       242 IHG-DREQREREQALGDFRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRI
                       *           *   *  *                                  

orata,       211 ERSVPWCLLRPRGKLILLPPTCARRRFQLAAFMDTVSSGSESRLWL
trota,       301 GRT-GRCGNTGRAVCFFDPGADGNLARSLVKVLSG--AQQEVPKWL
                  *    *    *      *         *           *   **

10.7% identity in 103 residues overlap; Score: 59.0; Gap frequency: 1.9%

orata,       114 FVLDEADRMLDMGFEPAMAQAGGVPRHTSERGSPDPNVQRYLPEEHPKDGGDLSQRRTIC
trota,       276 LDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFDPGADGNLARSLVKVLSGA
                                            *   *     *    *         *       

orata,       174 SWLSVWWAQPAVMRSRHLSRSPSSPRGSSFLTSSKQQERSVPW
trota,       336 QQEVPKWLEEAAFSAH--GTTGFNPGGRTFASTDSRKGGSLQR
                       *   *             * *  *         *   

16.5% identity in 115 residues overlap; Score: 58.0; Gap frequency: 0.9%

orata,        66 VRPVVVYGGVSTGHQIREICRGCNLCGTPGRLLDMIGRGKIG-LTKLRYFVLDEADRMLD
trota,       281 VQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFDPGADGNLARSLVKVLSGAQQEVP
                 *   *                    **  **       *  * *      **  *     

orata,       125 MGFEPAMAQAGGVPRHTSERGSPDPNVQRYLPEEHPKDGGDLSQRRTICSWLSVW
trota,       341 KWLEEAAFSAHGTTGFNPGGRTFASTDSRKGGSLQRDGASHLAAALSSGADDDEW
                    * *   * *                *            *            *

10.9% identity in 156 residues overlap; Score: 58.0; Gap frequency: 1.3%

orata,       104 GKIGLTKLRYFVLDEADRMLDMGFEPAMAQAGGVPRHTSERGSPDPNVQRYLPEEHPKDG
trota,         4 AQTGSGKTAAFLLPILQQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAHG
                    *  *   * *         *           *             * *        *

orata,       164 GDLSQRRTICSWLSVWWAQPAVMRSRHLSRSPSSPRGSSFLTSSKQQERSVPWCLLRPRG
trota,        64 TCVRPVVVYGGISTGHTIREILKGCNVLCATPG--RLMDIIGRGKIGLSKLRYLVLDEAD
                                            *   *   *        *          *    

orata,       224 KLILLPPTCARRRFQLAAFMDTVSSGSESRLWLTFA
trota,       122 RMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYP
                          * *                     *  

11.1% identity in 153 residues overlap; Score: 56.0; Gap frequency: 5.2%

orata,        14 FLLPILQQLMADGVAASSFSELLEPEAIIVAPTRE--LINQIYLEARKFAYGTCVRPVVV
trota,       114 YLVLDEADRMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYL
                  *       * *         *     *     *        * *               

orata,        72 YGGVSTG----HQIREICRGCNLCGTPGRLLDMIGRGKIGLTKLRYFVLDEADRMLDMGF
trota,       174 FLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKTT--GSERTMVFVETKRQADFIATF
                    *                         **        *      **           *

orata,       128 EPAMAQAGGVPRHTSERGSPDPNVQRYLPEEHP
trota,       232 LCREKVNTTSIHGDREQREREQALGDFRSGRCP
                                *                *

17.9% identity in 112 residues overlap; Score: 55.0; Gap frequency: 5.4%

orata,        59 KFAYGTCVRPVVVYGGVSTGHQIREICR--GCNLCGTPGRLLDMIGRGKI--GLTKLRYF
trota,       257 DFRSGRC-PVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCF
                  *  * *    *       *  *          *          ***            *

orata,       115 VLDEADRMLDMGFEPAMAQAG-GVPRHTSERGSPDPNVQRYLPEEHPKDGGD
trota,       316 FDPGADGNLARSLVKVLSGAQQEVPKWLEEAAFSAHGTTGFNPGGRTFASTD
                     **  *          *   **    *            *        *

10.5% identity in 57 residues overlap; Score: 54.0; Gap frequency: 0.0%

orata,        28 AASSFSELLEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIREI
trota,        94 TPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRKLVGSPGIPAKEDRQTL
                              *     * *                 *  *   *          

15.8% identity in 57 residues overlap; Score: 51.0; Gap frequency: 1.8%

orata,       190 HLSRSPSSPRGSSFLTSSKQQERSVPW-CLLRPRGKLILLPPTCARRRFQLAAFMDT
trota,       205 EVLKTTGSERTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSG
                        * *   *     *        *        *        *   *  *   

16.9% identity in 65 residues overlap; Score: 51.0; Gap frequency: 0.0%

orata,        22 LMADGVAASSFSELLEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQI
trota,       266 LVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFDPGADGNLA
                 * *  ***                            *    *   * *        *   

orata,        82 REICR
trota,       326 RSLVK
                 *    

11.0% identity in 91 residues overlap; Score: 49.0; Gap frequency: 1.1%

orata,        85 CRGCNLCGTPGRLLDMIGRGKIGLTKLRYFVLDEADRMLDMGFEPAMAQAGGVPRHTSER
trota,         3 CAQTGSGKTAAFLLPILQQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAH
                 *       *   **               *                              

orata,       145 GSPDPNVQRYLPEEHPKDGGD-LSQRRTICS
trota,        63 GTCVRPVVVYGGISTGHTIREILKGCNVLCA
                 *     *  *            *      * 

11.8% identity in 76 residues overlap; Score: 47.0; Gap frequency: 3.9%

orata,       186 MRSRHLSRSPSSPRGSSF--LTSSKQQERSVPWCLLRPRGKLILLPPTCARRRFQLAAFM
trota,        55 MEARKFAHGTCVRPVVVYGGISTGHTIREILKGCNVLCATPGRLMDII-GRGKIGLSKLR
                 *  *                             *         *      *    *    

orata,       244 DTVSSGSESRLWLTFA
trota,       114 YLVLDEADRMLDMGFE
                   *       *   * 

13.3% identity in 90 residues overlap; Score: 45.0; Gap frequency: 2.2%

orata,        88 CNLCGTPGRLLDMIGRGKIGLTKLRYF--VLDEADRMLDMGFEPAMAQAGGVPRHTSERG
trota,       306 CGNTGRAVCFFDPGADGNLARSLVKVLSGAQQEVPKWLEEAAFSAHGTTGFNPGGRTFAS
                 *   *      *    *               *    *      *    *  *       

orata,       146 SPDPNVQRYLPEEHPKDGGDLSQRRTICSW
trota,       366 TDSRKGGSLQRDGASHLAAALSSGADDDEW
                                     **       *

9.6% identity in 157 residues overlap; Score: 44.0; Gap frequency: 1.3%

orata,        48 ELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIREICRGCNLCGTPGRLLDMIGRG-KI
trota,       100 DIIGRGKIGLSKLRY-LVLDEADRMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYPE
                   *        *  *                   *             *   *       

orata,       107 GLTKLRYFVLDEADRMLDMGFEPAMAQAGGVPRHTSERGSPDPNVQRYLPEEHPKDGGDL
trota,       159 DIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSERTMVF
                    **    *      *  *                   *        *           

orata,       167 SQRRTICSWLSVWWAQPAVMRSRHLSRSPSSPRGSSF
trota,       219 VETKRQADFIATFLCREKVNTTSIHGDREQREREQAL
                                   *             *    

13.6% identity in 59 residues overlap; Score: 43.0; Gap frequency: 3.4%

orata,         4 AHTGSGLTAAFLLPILQQLMADGVAASSFSELLEPEAIIVAPTRELINQIYLEARKFAY
trota,       118 DEADRMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYPEDIQKLAAD-FLK-KDYLF
                       *   *           *  *      *   *        *     *       

28.6% identity in 14 residues overlap; Score: 41.0; Gap frequency: 0.0%

orata,       242 FMDTVSSGSESRLW
trota,       382 LAAALSSGADDDEW
                      ***     *

16.1% identity in 56 residues overlap; Score: 40.0; Gap frequency: 0.0%

orata,       199 RGSSFLTSSKQQERSVPWCLLRPRGKLILLPPTCARRRFQLAAFMDTVSSGSESRL
trota,       238 NTTSIHGDREQREREQALGDFRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNI
                    *      * **       *      *     * *          *        

16.7% identity in 36 residues overlap; Score: 39.0; Gap frequency: 5.6%

orata,       185 VMRSRHLSRSPSSPRGSSFLTSSKQQERSVPWCLLR
trota,       297 VHRIGRTGRCGNTGRAVCFFDPGADGN--LARSLVK
                 * *     *     *   *              *  

16.3% identity in 49 residues overlap; Score: 39.0; Gap frequency: 4.1%

orata,       229 PPTCARRRFQLAAFMDTVSSGSESRLW--LTFALASVQSWWRPLALPVD
trota,       303 TGRCGNTGRAVCFFDPGADGNLARSLVKVLSGAQQEVPKWLEEAAFSAH
                    *         *           *   *  *   *  *    *    

21.2% identity in 33 residues overlap; Score: 39.0; Gap frequency: 0.0%

orata,       137 VPRHTSERGSPDPNVQRYLPEEHPKDGGDLSQR
trota,       267 VATSVAARGLDIKDVQHIVNFDLPNNIDEYVHR
                 *      **     **       *        *